Draft:Metabolic velocity

  • Comment: Of the 7 cited sources, only one of them (Ref. 4, an ArXiv preprint and therefore not a reliable source) mentions metabolic velocity at all. Ref. 1 is completely off-topic, 2 is a paper on an adjacent but different topic and doesn't use the term, 3 is for a definition, and 5-7 are for general mathematical procedures that are not specifically related to the topic at hand. So we have effectively an unsourced article. This is not acceptable. I suspect AI was involved in drafting this article, due to the off-topic references (though I can't prove anything). Please find real sources that are on-topic, significant, reliable, and ideally secondary. If I see this article submitted again without such sourcing I will reject. WeirdNAnnoyed (talk) 23:29, 8 December 2025 (UTC)

Metabolic velocity is a quantitative, non-targeted measure in metabolomics[1][2]to assess the direction and intensity of overall metabolic shifts between two biological states (e.g., control vs. disease, or treated vs. untreated). Unlike classical metabolic flux analysis, this concept does not require the identification of specific metabolic pathways or individual reaction rates.  This concept aims to overcome the dependency of traditional metabolic flow analysis on intact metabolic pathway annotations, and provides better replicability[3]. [4]

Definition and calculation

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Metabolic velocity is derived by calculating the standardized difference in the robust statistical moment (especially position and scale estimates) of the molecular weight distribution of all detected metabolites in the two comparison groups, or metabolites of a particular classification. The molecular weight distribution is constructed by weighting the molecular weight of each detected metabolite with its relative strength or concentration. The concept has two main components:

1. Position velocity (): Position of molecular weight distribution measured by using Hodges-Lehmann estimation[5] (), quantifying the change in the concentration trend of molecular weight distribution.

symbol Molecular weight distribution changes Inferred direction (Group B vs. Group A)
Negative ( < 0) Center Shift Right () Anabolic: Tends to produce larger molecules.
positive ( > 0) Center Shift Left () Catabolic: Tends to break down into smaller molecules.

2. Scale velocity (): Scale of molecular weight distribution measured by using Bicker-Lehmann spread[6] (), quantifying the variation in the dispersion or range of molecular weight distribution.

symbol Molecular weight distribution changes Inferred direction (Group B vs. Group A)
positive ( > 0) Narrowing of distribution () Centrabolic: Metabolites tend to be medium-sized (convergent).
Negative ( < 0) Distribution widens () Duobolic: Metabolites tend to be extremely small and extremely large (divergent).

Explanation

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combine  and   can define a metabolic momentum map that places the overall metabolic state of one group relative to another in one of four quadrants (e.g., anabolic and centripetal metabolism, or catabolism and bidirectional metabolism). Magnitude of velocity indicates the intensity of metabolic shifts.[7]

References

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  1. Winter, Heather L.; Johnson, Dylan; Jarmusch, Alan K. (2025). "Open-Source System Suitability: Mass Spectrometry Query Language Lab (MassQLab)". Rapid Communications in Mass Spectrometry. 39 (23) e10132. doi:10.1002/rcm.10132. PMC 12404904. PMID 40897533.
  2. Hoffmann, Martin A.; Nothias, Louis-Félix; Ludwig, Marcus; Fleischauer, Markus; Gentry, Emily C.; Witting, Michael; Dorrestein, Pieter C.; Dührkop, Kai; Böcker, Sebastian (2021-10-14). "High-confidence structural annotation of metabolites absent from spectral libraries". Nature Biotechnology. 40 (3): 411–421. doi:10.1038/s41587-021-01045-9. ISSN 1087-0156. PMC 8926923. PMID 34650271.
  3. National Academies Of Sciences, Engineering; Medicine (2019-09-20). Reproducibility and Replicability in Science. Bibcode:2019nap..book25303N. doi:10.17226/25303. ISBN 978-0-309-48616-3. PMID 31596559.
  4. Tuobang, Li (2024). "Infer metabolic velocities from moment differences of molecular weight distributions". arXiv:2402.14887v4 [q-bio.QM].
  5. Hodges, J. L.; Lehmann, E. L. (June 1963). "Estimates of Location Based on Rank Tests". The Annals of Mathematical Statistics. 34 (2): 598–611. doi:10.1214/aoms/1177704172. ISSN 0003-4851.
  6. Bickel, P. J.; Lehmann, E. L. (2011-11-19), "Descriptive Statistics for Nonparametric Models IV. Spread", Selected Works of E. L. Lehmann, Boston, MA: Springer US, pp. 519–526, doi:10.1007/978-1-4614-1412-4_45, ISBN 978-1-4614-1411-7, retrieved 2025-12-06{{citation}}: CS1 maint: work parameter with ISBN (link)
  7. Li, Tuobang (2023-12-19). "Infer metabolic momentum from moment differences of mass-weighted intensity distributions". [n/a] (Unpublished manuscript).